PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G221900.1
Common NameB456_008G221900, LOC105764962
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 237aa    MW: 26643.9 Da    PI: 8.7389
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G221900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.23.7e-332983155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Gorai.008G221900.1 29 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6192686IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-322684IPR009057Homeodomain-like
SuperFamilySSF466891.79E-162986IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-252984IPR006447Myb domain, plants
PfamPF002496.3E-93182IPR001005SANT/Myb domain
PfamPF143793.1E-20130175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MERLNYGGGG GGEGNYWYEN EVVMSRDPKP RLRWTADLHD RFVDAVTKLG GPDKATPKSV  60
LRLMGMKGLT LYHLKSHLQK YRLGQQTRKQ NAVDLNKVNG GSSYVQCSNH FSGTIITNSP  120
RADSEQRQIP VAEALKNQLE VQQTLQEQLE VEKKLQMRID AQGKYLQAIL EKAQKRVSID  180
INYCEGNGEE ETNFSVLNKA NCSAFQNYGG RRRENSKDVK LEVEGDSTAF DLKDQT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439258.11e-177PREDICTED: myb family transcription factor APL-like isoform X1
SwissprotQ9SAK54e-46APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0D2TAQ71e-177A0A0D2TAQ7_G
STRINGSolyc08g076010.2.11e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2443634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.12e-59G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]